Bio.ROIManager Class Reference

Inheritance diagram for Bio.ROIManager:

Public Member Functions
void	CopySelection ()
	It takes the selected ROIs and copies them to the clipboard.
void	PasteSelection ()
void	InitItems ()
void	UpdateAnnotationList ()
void	updateROI (int index, ROI an)
void	UpdatePointBox ()

Static Public Member Functions
static ROIManager	Create ()

Public Attributes
BioImage	image
ROI	anno = new ROI()
bool	autoUpdate = true

Static Public Attributes
static bool	showBounds = true
static bool	showText = false
static bool	showR = true
static bool	showG = true
static bool	showB = true

Protected Member Functions
	ROIManager (Builder builder, IntPtr handle)

Properties
static Dictionary< string, ROI >	rois [get, set]

Detailed Description

Definition at line 16 of file ROIManager.cs.

Constructor & Destructor Documentation

ROIManager()

Bio.ROIManager.ROIManager ( Builder builder, IntPtr handle )

protected

Definition at line 119 of file ROIManager.cs.

                                                             : base(handle)
        {
            _builder = builder;
            builder.Autoconnect(this);
            xBox.ValueChanged += xBox_ValueChanged;
            yBox.ValueChanged += yBox_ValueChanged;
            wBox.ValueChanged += wBox_ValueChanged;
            hBox.ValueChanged += hBox_ValueChanged;
            rBox.ValueChanged += rBox_ValueChanged;
            gBox.ValueChanged += gBox_ValueChanged;
            bBox.ValueChanged += bBox_ValueChanged;
            zBox.ValueChanged += zBox_ValueChanged;
            cBox.ValueChanged += cBox_ValueChanged;
            tBox.ValueChanged += tBox_ValueChanged;
            widthBox.ValueChanged += strokeWBox_ValueChanged;
            pointXBox.ValueChanged += pointXBox_ValueChanged;
            pointYBox.ValueChanged += pointYBox_ValueChanged;
            pointBox.ValueChanged += pointBox_ValueChanged;
            selBox.ValueChanged += selectBoxSize_ValueChanged;
            widthBox.ValueChanged += strokeWBox_ValueChanged;
            textBox.Changed += textBox_TextChanged;
            idBox.Changed += idBox_TextChanged;
            boundsBox.Clicked += showBoundsBox_ActiveChanged;
            showTextBox.Clicked += showTextBox_ActiveChanged;
            showRBox.Clicked += showRBox_ActiveChanged;
            showGBox.Clicked += showGBox_ActiveChanged;
            showBBox.Clicked += showBBox_ActiveChanged;
            showMasksBox.Clicked += ShowMasksBox_Clicked;
            this.DeleteEvent += ROIManager_DeleteEvent;
            menuDelete.ButtonPressEvent += MenuDelete_ButtonPressEvent;
            menuCopy.ButtonPressEvent += MenuCopy_ButtonPressEvent;
            menuPaste.ButtonPressEvent += MenuPaste_ButtonPressEvent;
 
            //roiView.Selection.Changed += roiView_SelectedIndexChanged;
            roiView.RowActivated += RoiView_RowActivated;
            this.FocusInEvent += ROIManager_FocusInEvent;
            this.FocusActivated += ROIManager_Activated;
            roiView.ButtonPressEvent += RoiView_ButtonPressEvent;
 
            xBox.Adjustment.Upper = PointD.MaxX;
            xBox.Adjustment.StepIncrement= 0.1;
            xBox.Adjustment.PageIncrement= 1;
            yBox.Adjustment.Upper = PointD.MaxY;
            yBox.Adjustment.StepIncrement = 0.1;
            yBox.Adjustment.PageIncrement = 1;
            wBox.Adjustment.Upper = PointD.MaxX;
            wBox.Adjustment.StepIncrement = 0.1;
            wBox.Adjustment.PageIncrement = 1;
            hBox.Adjustment.Upper = PointD.MaxY;
            xBox.Adjustment.StepIncrement = 0.1;
            xBox.Adjustment.PageIncrement = 1;
            rBox.Adjustment.Upper = byte.MaxValue;
            rBox.Adjustment.StepIncrement = 1;
            rBox.Adjustment.PageIncrement = 1;
            gBox.Adjustment.Upper = byte.MaxValue;
            gBox.Adjustment.StepIncrement = 1;
            gBox.Adjustment.PageIncrement = 1;
            bBox.Adjustment.Upper = byte.MaxValue;
            bBox.Adjustment.StepIncrement = 1;
            bBox.Adjustment.PageIncrement = 1;
            zBox.Adjustment.Upper = 10000;
            zBox.Adjustment.StepIncrement = 1;
            zBox.Adjustment.PageIncrement = 1;
            cBox.Adjustment.Upper = 10000;
            cBox.Adjustment.StepIncrement = 1;
            cBox.Adjustment.PageIncrement = 1;
            tBox.Adjustment.Upper = 10000;
            tBox.Adjustment.StepIncrement = 1;
            tBox.Adjustment.PageIncrement = 1;
            widthBox.Adjustment.Upper = 100;
            widthBox.Adjustment.StepIncrement = 1;
            widthBox.Adjustment.PageIncrement = 1;
            pointBox.Adjustment.Upper = 100000;
            pointBox.Adjustment.StepIncrement = 1;
            pointBox.Adjustment.PageIncrement = 1;
            pointXBox.Adjustment.Upper = PointD.MaxX;
            pointXBox.Adjustment.StepIncrement = 0.1;
            pointXBox.Adjustment.PageIncrement = 1;
            pointYBox.Adjustment.Upper = PointD.MaxY;
            pointYBox.Adjustment.StepIncrement = 0.1;
            pointYBox.Adjustment.PageIncrement = 1;
            selBox.Value = ROI.selectBoxSize;
            selBox.Adjustment.Upper = 100;
            selBox.Adjustment.StepIncrement = 1;
            roiView.ActivateOnSingleClick = true;
            InitItems();
            App.ApplyStyles(this);
        }

Member Function Documentation

CopySelection()

void Bio.ROIManager.CopySelection

(

)

It takes the selected ROIs and copies them to the clipboard.

Definition at line 216 of file ROIManager.cs.

        {
            copys.Clear();
            string s = "";
            List<ROI> rois = new List<ROI>();
            rois.AddRange(ImageView.SelectedImage.AnnotationsR);
            rois.AddRange(ImageView.SelectedImage.AnnotationsG);
            rois.AddRange(ImageView.SelectedImage.AnnotationsB);
            foreach (ROI item in rois)
            {
                if (item.Selected)
                {
                    copys.Add(item);
                    s += BioImage.ROIToString(item);
                }
            }
            Clipboard clipboard = Clipboard.Get(Gdk.Selection.Clipboard);
            clipboard.Text = s;
        }

Create()

static ROIManager Bio.ROIManager.Create ( )

static

Definition at line 113 of file ROIManager.cs.

        {
            Builder builder = new Builder(new FileStream(System.IO.Path.GetDirectoryName(Environment.ProcessPath) + "/" + "Glade/ROIManager.glade", FileMode.Open));
            return new ROIManager(builder, builder.GetObject("roiManager").Handle);
        }

InitItems()

void Bio.ROIManager.InitItems

(

)

It creates a treeview with 4 columns, and then populates the treeview with the data from the Images class

Definition at line 359 of file ROIManager.cs.

        {
            Gtk.TreeViewColumn typeCol = new Gtk.TreeViewColumn();
            typeCol.Title = "Type";
            Gtk.CellRendererText typeCell = new Gtk.CellRendererText();
            typeCol.PackStart(typeCell, true);
 
            Gtk.TreeViewColumn idCol = new Gtk.TreeViewColumn();
            idCol.Title = "ID";
            Gtk.CellRendererText idCell = new Gtk.CellRendererText();
            idCol.PackStart(idCell, true);
 
            Gtk.TreeViewColumn textCol = new Gtk.TreeViewColumn();
            textCol.Title = "Text";
            Gtk.CellRendererText textCell = new Gtk.CellRendererText();
            textCol.PackStart(textCell, true);
 
            Gtk.TreeViewColumn rectCol = new Gtk.TreeViewColumn();
            rectCol.Title = "Bounds";
            Gtk.CellRendererText rectCell = new Gtk.CellRendererText();
            rectCol.PackStart(rectCell, true);
 
 
            roiView.AppendColumn(typeCol);
            roiView.AppendColumn(idCol);
            roiView.AppendColumn(textCol);
            roiView.AppendColumn(rectCol);
 
            typeCol.AddAttribute(typeCell, "text", 0);
            idCol.AddAttribute(idCell, "text", 1);
            textCol.AddAttribute(textCell, "text", 2);
            rectCol.AddAttribute(rectCell, "text", 3);
 
            Gtk.TreeStore store = new Gtk.TreeStore(typeof(string), typeof(string), typeof(string), typeof(string));
 
            foreach (BioImage b in Images.images)
            {
                Gtk.TreeIter iter = store.AppendValues(System.IO.Path.GetFileName(b.Filename));
                foreach (ROI r in b.Annotations)
                {
                    store.AppendValues(iter, r.type.ToString(), r.id, r.Text, r.BoundingBox.ToString());
                }
            }
            roiView.Model = store;
            
        }

PasteSelection()

void Bio.ROIManager.PasteSelection

(

)

The function takes the text from the clipboard and splits it into lines. Each line is then converted into an ROI object and added to the list of annotations

Definition at line 237 of file ROIManager.cs.

        {
            Clipboard clipboard = Clipboard.Get(Gdk.Selection.Clipboard);
            string text = clipboard.WaitForText();
            string[] sts = text.Split(BioImage.NewLine);
            foreach (string line in sts)
            {
                if (line.Length > 8)
                {
                    ROI an = BioImage.StringToROI(line);
                    //We set the coordinates of the ROI's we are pasting
                    an.coord = App.viewer.GetCoordinate();
                    ImageView.SelectedImage.Annotations.Add(an);
                }
            }
            UpdateView();
        }

UpdateAnnotationList()

void Bio.ROIManager.UpdateAnnotationList

(

)

It takes a list of images, and for each image, it takes a list of annotations, and for each annotation, it adds the annotation to a dictionary, and then adds the annotation to a treeview

Definition at line 408 of file ROIManager.cs.

        {
            rois.Clear();
            Gtk.TreeStore store = new Gtk.TreeStore(typeof(string), typeof(string), typeof(string), typeof(string));
            foreach (BioImage b in Images.images)
            {
                Gtk.TreeIter iter = store.AppendValues(System.IO.Path.GetFileName(b.Filename));
                foreach (ROI r in b.Annotations)
                {
                    if (r.id == "")
                    {
                        store.AppendValues(iter, r.type.ToString(), rng.Next(), r.Text, r.BoundingBox.ToString());
                    }
                    else
                    {
                        if(!rois.ContainsKey(r.id))
                        rois.Add(r.id, r);
                        store.AppendValues(iter, r.type.ToString(), r.id, r.Text, r.BoundingBox.ToString());
                    }
                }
            }
            roiView.Model = store;
        }

UpdatePointBox()

void Bio.ROIManager.UpdatePointBox

(

)

This function updates the point box with the current point

Returns

The point of the annotation.

Definition at line 716 of file ROIManager.cs.

        {
            if (anno == null)
                return;
            PointD d = anno.GetPoint((int)pointBox.Value);
            pointXBox.Value = (int)d.X;
            pointYBox.Value = (int)d.Y;
        }

updateROI()

void Bio.ROIManager.updateROI	(	int	index,
		ROI	an )

‍Update the ROI at the specified index with the specified ROI

Parameters

index	the index of the annotation to be updated
ROI	The ROI object to be updated

Returns

The ROI object is being returned.

Definition at line 443 of file ROIManager.cs.

        {
            if (ImageView.SelectedImage == null)
                return;
            ImageView.SelectedImage.Annotations[index] = an;
            UpdateView();
        }

Member Data Documentation

anno

ROI Bio.ROIManager.anno = new ROI()

Definition at line 301 of file ROIManager.cs.

autoUpdate

bool Bio.ROIManager.autoUpdate = true

Definition at line 712 of file ROIManager.cs.

image

BioImage Bio.ROIManager.image

Definition at line 91 of file ROIManager.cs.

showB

bool Bio.ROIManager.showB = true

static

Definition at line 660 of file ROIManager.cs.

showBounds

bool Bio.ROIManager.showBounds = true

static

Definition at line 656 of file ROIManager.cs.

showG

bool Bio.ROIManager.showG = true

static

Definition at line 659 of file ROIManager.cs.

showR

bool Bio.ROIManager.showR = true

static

Definition at line 658 of file ROIManager.cs.

showText

bool Bio.ROIManager.showText = false

static

Definition at line 657 of file ROIManager.cs.

Property Documentation

rois

Dictionary<string, ROI> Bio.ROIManager.rois

staticgetset

Definition at line 93 of file ROIManager.cs.

        {
            get
            {
                foreach (var item in ImageView.SelectedImage.Annotations)
                {
                    if(!rts.ContainsKey(item.id))
                    {
                        if (item.id == "" || item.id == null)
                            item.id = rng.Next(0,999999).ToString();
                        rts.Add(item.id, item);
                    }
                }
                return rts;
            }
            set 
            {
                rts = value;
            }
        }

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The documentation for this class was generated from the following file:

• BioGTK/BioGTK/Source/ROIManager.cs