BioCore.ImageJ Class Reference

Classes
class	Macro
class	RoiDecoder
class	RoiEncoder

Static Public Member Functions
static void	RunMacro (string file, string param)
static void	RunString (string con, string param, bool headless)
static void	RunOnImage (string con, bool headless, bool onTab, bool bioformats, bool newTab)
static bool	Initialize (bool imagej)
static bool	SetImageJPath ()

Static Public Attributes
static List< Macro.Command >	Macros = new List<Macro.Command>()
static string	ImageJPath
static List< Process >	processes = new List<Process>()

Properties
static bool	Initialized [get]

Detailed Description

Definition at line 13 of file ImageJ.cs.

Member Function Documentation

Initialize()

static bool BioCore.ImageJ.Initialize ( bool  imagej )

static

This function is used to initialize the path of the ImageJ.exe file

Parameters

path	The path to the ImageJ executable.

Definition at line 243 of file ImageJ.cs.

RunMacro()

static void BioCore.ImageJ.RunMacro ( string  file, string  param  )

static

It runs a macro in ImageJ

Parameters

file	the path to the macro file
param

Returns

The macro is being returned.

Definition at line 111 of file ImageJ.cs.

RunOnImage()

static void BioCore.ImageJ.RunOnImage ( string  con, bool  headless, bool  onTab, bool  bioformats, bool  newTab  )

static

It runs a macro on the selected image, saves the result as a new image, and then opens the new image in a new tab

Parameters

con	The ImageJ macro to run.
headless	Whether to run ImageJ in headless mode.
onTab	If true, the image will be opened in a new tab. If false, the image will be opened in the current tab.
bioformats	If the image is a bioformats image, it will use the bioformats importer to open the image.

Returns

The return value is the result of the last statement in the script.

Definition at line 185 of file ImageJ.cs.

RunString()

static void BioCore.ImageJ.RunString ( string  con, string  param, bool  headless  )

static

It runs a macro in ImageJ

Parameters

con	The macro code
param	The parameters to pass to the macro.
headless	whether or not to run ImageJ in headless mode

Returns

The macro is returning a string.

Definition at line 133 of file ImageJ.cs.

SetImageJPath()

static bool BioCore.ImageJ.SetImageJPath ( )

static

If the ImageJ path is not set, prompt the user to set it

Returns

The return value is a boolean.

Definition at line 261 of file ImageJ.cs.

Member Data Documentation

ImageJPath

string BioCore.ImageJ.ImageJPath

static

Definition at line 100 of file ImageJ.cs.

Macros

List<Macro.Command> BioCore.ImageJ.Macros = new List<Macro.Command>()

static

Definition at line 99 of file ImageJ.cs.

processes

List<Process> BioCore.ImageJ.processes = new List<Process>()

static

Definition at line 101 of file ImageJ.cs.

Property Documentation

Initialized

bool BioCore.ImageJ.Initialized

staticget

Definition at line 104 of file ImageJ.cs.

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The documentation for this class was generated from the following file:

• BioCore/BioCore/Source/ImageJ.cs