BioLib.BioImage.WellPlate Class Reference

Classes
class	Well

Public Member Functions
	WellPlate ()
	Parameterless constructor used by the Zarr HCS plate path.
	WellPlate (BioImage b)

Public Attributes
List< Well >	Wells = new List<Well>()
PointD	Origin
string	ID
string	Name

Constructor & Destructor Documentation

WellPlate() [1/2]

BioLib.BioImage.WellPlate.WellPlate

(

)

Parameterless constructor used by the Zarr HCS plate path.

{ }

WellPlate() [2/2]

BioLib.BioImage.WellPlate.WellPlate

(

BioImage

b

)

            {
                ID = b.meta.getPlateID(b.series);
                Name = b.meta.getPlateName(b.series);
                double x, y;
                if (b.meta.getPlateWellOriginX(b.series) != null)
                    x = b.meta.getPlateWellOriginX(b.series).value().doubleValue();
                else
                    x = 0;
                if (b.meta.getPlateWellOriginY(b.series) != null)
                    y = b.meta.getPlateWellOriginY(b.series).value().doubleValue();
                else
                    y = 0;
                Origin = new PointD(x, y);
                int ws = b.meta.getWellCount(b.series);
                for (int i = 0; i < ws; i++)
                {
                    Well w = new Well();
                    w.ID = b.meta.getWellID(b.series, i);
                    w.Column = b.meta.getWellColumn(b.series, i).getNumberValue().intValue();
                    w.Row = b.meta.getWellRow(b.series, i).getNumberValue().intValue();
                    int wsc = b.meta.getWellSampleCount(b.series, i);
                    for (int s = 0; s < wsc; s++)
                    {
                        Well.Sample sa = new Well.Sample();
                        sa.Time = b.meta.getWellSampleTimepoint(b.series, i, s);
                        sa.Index = b.meta.getWellSampleIndex(b.series, i, s).getNumberValue().intValue();
                        double sx, sy;
                        if (b.meta.getWellSamplePositionX(b.series, i, s) != null)
                            sx = b.meta.getWellSamplePositionX(b.series, i, s).value().doubleValue();
                        else sx = 0;
                        if (b.meta.getWellSamplePositionY(b.series, i, s) != null)
                            sy = b.meta.getWellSamplePositionY(b.series, i, s).value().doubleValue();
                        else sy = 0;
                        sa.Position = new PointD(sx, sy);
                        sa.ID = b.meta.getWellSampleID(b.series, i, s);
                        w.Samples.Add(sa);
                    }
                    ome.xml.model.primitives.Color c = b.meta.getWellColor(b.series, i);
                    if (c != null)
                        w.Color = System.Drawing.Color.FromArgb(c.getAlpha(), c.getRed(), c.getGreen(), c.getBlue());
                    Wells.Add(w);
                }
 
            }

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The documentation for this class was generated from the following file:

• BioLib/Source/Bio.cs