BioLib.BioImage.ImageJDesc Class Reference

Public Member Functions
ImageJDesc	FromImage (BioImage b)
string	GetString ()
void	SetString (string desc)

Public Attributes
string	ImageJ
int	images = 0
int	channels = 0
int	slices = 0
int	frames = 0
bool	hyperstack
string	mode
string	unit
double	finterval = 0
double	spacing = 0
bool	loop
double	min = 0
double	max = 0
int	count
bool	bit8color = false

Detailed Description

Definition at line 3487 of file Bio.cs.

Member Function Documentation

FromImage()

ImageJDesc BioLib.BioImage.ImageJDesc.FromImage

(

BioImage

b

)

The function "FromImage" takes a BioImage object and sets the properties of an ImageJDesc object based on the properties of the BioImage object.

Parameters

BioImage

The BioImage parameter represents an object that contains information about a biological image, such as the number of images, channels, slices, and frames, as well as other properties like frame interval, physical size, and channel ranges.

Returns

The method is returning an instance of the ImageJDesc class.

Definition at line 3513 of file Bio.cs.

            {
                ImageJ = "";
                images = b.ImageCount;
                channels = b.SizeC;
                slices = b.SizeZ;
                frames = b.SizeT;
                hyperstack = true;
                mode = "grayscale";
                unit = "micron";
                finterval = b.frameInterval;
                spacing = b.PhysicalSizeZ;
                loop = false;
                /*
                double dmax = double.MinValue;
                double dmin = double.MaxValue;
                foreach (Channel c in b.Channels)
                {
                    if(dmax < c.Max)
                        dmax = c.Max;
                    if(dmin > c.Min)
                        dmin = c.Min;
                }
                min = dmin;
                max = dmax;
                */
                min = b.Channels[0].RangeR.Min;
                max = b.Channels[0].RangeR.Max;
                return this;
            }

GetString()

string BioLib.BioImage.ImageJDesc.GetString

(

)

It returns a string that contains the values of all the variables in the imagej image

Returns

A string representation of the imagej image data.

Definition at line 3546 of file Bio.cs.

            {
                string s = "";
                s += "ImageJ=" + ImageJ + "\n";
                s += "images=" + images + "\n";
                s += "channels=" + channels.ToString() + "\n";
                s += "slices=" + slices.ToString() + "\n";
                s += "frames=" + frames.ToString() + "\n";
                s += "hyperstack=" + hyperstack.ToString() + "\n";
                s += "mode=" + mode.ToString() + "\n";
                s += "unit=" + unit.ToString() + "\n";
                s += "finterval=" + finterval.ToString() + "\n";
                s += "spacing=" + spacing.ToString() + "\n";
                s += "loop=" + loop.ToString() + "\n";
                s += "min=" + min.ToString() + "\n";
                s += "max=" + max.ToString() + "\n";
                return s;
            }

SetString()

void BioLib.BioImage.ImageJDesc.SetString

(

string

desc

)

It sets the string to the value of the parameter.

Parameters

desc	The description of the string.

Definition at line 3567 of file Bio.cs.

            {
                string[] lines = desc.Split(new string[] { "\r\n", "\r", "\n" }, StringSplitOptions.None);
                int maxlen = 20;
                for (int i = 0; i < lines.Length; i++)
                {
                    if (i < maxlen)
                    {
                        string[] sp = lines[i].Split('=');
                        if (sp[0] == "ImageJ")
                            ImageJ = sp[1];
                        if (sp[0] == "images")
                            images = int.Parse(sp[1], CultureInfo.InvariantCulture);
                        if (sp[0] == "channels")
                            channels = int.Parse(sp[1], CultureInfo.InvariantCulture);
                        if (sp[0] == "slices")
                            slices = int.Parse(sp[1], CultureInfo.InvariantCulture);
                        if (sp[0] == "frames")
                            frames = int.Parse(sp[1], CultureInfo.InvariantCulture);
                        if (sp[0] == "hyperstack")
                            hyperstack = bool.Parse(sp[1]);
                        if (sp[0] == "mode")
                            mode = sp[1];
                        if (sp[0] == "unit")
                            unit = sp[1];
                        if (sp[0] == "finterval")
                            finterval = double.Parse(sp[1], CultureInfo.InvariantCulture);
                        if (sp[0] == "spacing")
                            spacing = double.Parse(sp[1], CultureInfo.InvariantCulture);
                        if (sp[0] == "loop")
                            loop = bool.Parse(sp[1]);
                        if (sp[0] == "min")
                            min = double.Parse(sp[1], CultureInfo.InvariantCulture);
                        if (sp[0] == "max")
                            max = double.Parse(sp[1], CultureInfo.InvariantCulture);
                        if (sp[0] == "8bitcolor")
                            bit8color = bool.Parse(sp[1]);
                    }
                    else
                        return;
                }
 
            }

Member Data Documentation

bit8color

bool BioLib.BioImage.ImageJDesc.bit8color = false

Definition at line 3503 of file Bio.cs.

channels

int BioLib.BioImage.ImageJDesc.channels = 0

Definition at line 3491 of file Bio.cs.

count

int BioLib.BioImage.ImageJDesc.count

Definition at line 3502 of file Bio.cs.

finterval

double BioLib.BioImage.ImageJDesc.finterval = 0

Definition at line 3497 of file Bio.cs.

frames

int BioLib.BioImage.ImageJDesc.frames = 0

Definition at line 3493 of file Bio.cs.

hyperstack

bool BioLib.BioImage.ImageJDesc.hyperstack

Definition at line 3494 of file Bio.cs.

ImageJ

string BioLib.BioImage.ImageJDesc.ImageJ

Definition at line 3489 of file Bio.cs.

images

int BioLib.BioImage.ImageJDesc.images = 0

Definition at line 3490 of file Bio.cs.

loop

bool BioLib.BioImage.ImageJDesc.loop

Definition at line 3499 of file Bio.cs.

max

double BioLib.BioImage.ImageJDesc.max = 0

Definition at line 3501 of file Bio.cs.

min

double BioLib.BioImage.ImageJDesc.min = 0

Definition at line 3500 of file Bio.cs.

mode

string BioLib.BioImage.ImageJDesc.mode

Definition at line 3495 of file Bio.cs.

slices

int BioLib.BioImage.ImageJDesc.slices = 0

Definition at line 3492 of file Bio.cs.

spacing

double BioLib.BioImage.ImageJDesc.spacing = 0

Definition at line 3498 of file Bio.cs.

unit

string BioLib.BioImage.ImageJDesc.unit

Definition at line 3496 of file Bio.cs.

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The documentation for this class was generated from the following file:

• BioLib/Source/Bio.cs