BioLib.BioImage.ImageJDesc Class Reference

Public Member Functions
ImageJDesc	FromImage (BioImage b)
string	GetString ()
void	SetString (string desc)

Public Attributes
string	ImageJ
int	images = 0
int	channels = 0
int	slices = 0
int	frames = 0
bool	hyperstack
string	mode
string	unit
double	finterval = 0
double	spacing = 0
bool	loop
double	min = 0
double	max = 0
int	count
bool	bit8color = false

Member Function Documentation

FromImage()

ImageJDesc BioLib.BioImage.ImageJDesc.FromImage

(

BioImage

b

)

The function "FromImage" takes a BioImage object and sets the properties of an ImageJDesc object based on the properties of the BioImage object.

Parameters

BioImage

The BioImage parameter represents an object that contains information about a biological image, such as the number of images, channels, slices, and frames, as well as other properties like frame interval, physical size, and channel ranges.

Returns

The method is returning an instance of the ImageJDesc class.

            {
                ImageJ = "";
                images = b.ImageCount;
                channels = b.SizeC;
                slices = b.SizeZ;
                frames = b.SizeT;
                hyperstack = true;
                mode = "grayscale";
                unit = "micron";
                finterval = b.frameInterval;
                spacing = b.PhysicalSizeZ;
                loop = false;
                /*
                double dmax = double.MinValue;
                double dmin = double.MaxValue;
                foreach (Channel c in b.Channels)
                {
                    if(dmax < c.Max)
                        dmax = c.Max;
                    if(dmin > c.Min)
                        dmin = c.Min;
                }
                min = dmin;
                max = dmax;
                */
                min = b.Channels[0].RangeR.Min;
                max = b.Channels[0].RangeR.Max;
                return this;
            }

GetString()

string BioLib.BioImage.ImageJDesc.GetString

(

)

It returns a string that contains the values of all the variables in the imagej image

Returns

A string representation of the imagej image data.

            {
                string s = "";
                s += "ImageJ=" + ImageJ + "\n";
                s += "images=" + images + "\n";
                s += "channels=" + channels.ToString() + "\n";
                s += "slices=" + slices.ToString() + "\n";
                s += "frames=" + frames.ToString() + "\n";
                s += "hyperstack=" + hyperstack.ToString() + "\n";
                s += "mode=" + mode.ToString() + "\n";
                s += "unit=" + unit.ToString() + "\n";
                s += "finterval=" + finterval.ToString() + "\n";
                s += "spacing=" + spacing.ToString() + "\n";
                s += "loop=" + loop.ToString() + "\n";
                s += "min=" + min.ToString() + "\n";
                s += "max=" + max.ToString() + "\n";
                return s;
            }

SetString()

void BioLib.BioImage.ImageJDesc.SetString

(

string

desc

)

It sets the string to the value of the parameter.

Parameters

desc	The description of the string.

            {
                string[] lines = desc.Split(new string[] { "\r\n", "\r", "\n" }, StringSplitOptions.None);
                int maxlen = 20;
                for (int i = 0; i < lines.Length; i++)
                {
                    if (i < maxlen)
                    {
                        string[] sp = lines[i].Split('=');
                        if (sp[0] == "ImageJ")
                            ImageJ = sp[1];
                        if (sp[0] == "images")
                            images = int.Parse(sp[1], CultureInfo.InvariantCulture);
                        if (sp[0] == "channels")
                            channels = int.Parse(sp[1], CultureInfo.InvariantCulture);
                        if (sp[0] == "slices")
                            slices = int.Parse(sp[1], CultureInfo.InvariantCulture);
                        if (sp[0] == "frames")
                            frames = int.Parse(sp[1], CultureInfo.InvariantCulture);
                        if (sp[0] == "hyperstack")
                            hyperstack = bool.Parse(sp[1]);
                        if (sp[0] == "mode")
                            mode = sp[1];
                        if (sp[0] == "unit")
                            unit = sp[1];
                        if (sp[0] == "finterval")
                            finterval = double.Parse(sp[1], CultureInfo.InvariantCulture);
                        if (sp[0] == "spacing")
                            spacing = double.Parse(sp[1], CultureInfo.InvariantCulture);
                        if (sp[0] == "loop")
                            loop = bool.Parse(sp[1]);
                        if (sp[0] == "min")
                            min = double.Parse(sp[1], CultureInfo.InvariantCulture);
                        if (sp[0] == "max")
                            max = double.Parse(sp[1], CultureInfo.InvariantCulture);
                        if (sp[0] == "8bitcolor")
                            bit8color = bool.Parse(sp[1]);
                    }
                    else
                        return;
                }
 
            }

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The documentation for this class was generated from the following file:

• Source/Bio.cs