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BioImager
3.9.1
A .NET microscopy imaging library. Supports various microscopes by using imported libraries & GUI automation. Supported libraries include PriorĀ® & ZeissĀ® & all devices supported by Micromanager 2.0 and python-microscope.
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Public Member Functions | |
| def | __init__ (self, **kwargs) |
| def | abort (self) |
| def | set_exposure_time (self, value) |
| def | get_exposure_time (self) |
| def | get_cycle_time (self) |
| def | soft_trigger (self) |
Public Member Functions inherited from microscope._utils.OnlyTriggersOnceOnSoftwareMixin | |
| microscope.TriggerType | trigger_type (self) |
| microscope.TriggerMode | trigger_mode (self) |
| None | set_trigger (self, microscope.TriggerType ttype, microscope.TriggerMode tmode) |
Public Member Functions inherited from microscope.abc.TriggerTargetMixin | |
| microscope.TriggerMode | trigger_mode (self) |
| microscope.TriggerType | trigger_type (self) |
| None | set_trigger (self, microscope.TriggerType ttype, microscope.TriggerMode tmode) |
| None | trigger (self) |
Public Member Functions inherited from microscope.abc.Camera | |
| None | __init__ (self, **kwargs) |
| def | set_readout_mode (self, description) |
| def | get_transform (self) |
| def | set_transform (self, transform) |
| None | set_exposure_time (self, float value) |
| float | get_exposure_time (self) |
| float | get_cycle_time (self) |
| typing.Tuple[int, int] | get_sensor_shape (self) |
| microscope.Binning | get_binning (self) |
| None | set_binning (self, microscope.Binning binning) |
| microscope.ROI | get_roi (self) |
| None | set_roi (self, microscope.ROI roi) |
Public Member Functions inherited from microscope.abc.DataDevice | |
| None | __init__ (self, int buffer_length=0, **kwargs) |
| def | __del__ (self) |
| None | abort (self) |
| None | enable (self) |
| None | disable (self) |
| None | set_client (self, new_client) |
| None | update_settings (self, settings, bool init=False) |
| None | receiveClient (self, str client_uri) |
| def | grab_next_data (self, bool soft_trigger=True) |
| None | receiveData (self, data, timestamp) |
Public Member Functions inherited from microscope.abc.Device | |
| None | __init__ (self) |
| None | __del__ (self) |
| bool | get_is_enabled (self) |
| None | disable (self) |
| None | enable (self) |
| None | initialize (self) |
| None | shutdown (self) |
| None | add_setting (self, name, dtype, get_func, set_func, values, typing.Optional[typing.Callable[[], bool]] readonly=None) |
| def | get_setting (self, str name) |
| def | get_all_settings (self) |
| None | set_setting (self, str name, value) |
| def | describe_setting (self, str name) |
| def | describe_settings (self) |
| def | update_settings (self, incoming, bool init=False) |
Additional Inherited Members | |
Public Attributes inherited from microscope.abc.DataDevice | |
| enabled | |
Public Attributes inherited from microscope.abc.Device | |
| enabled | |
Static Public Attributes inherited from microscope.abc.Camera | |
| list | ALLOWED_TRANSFORMS = [p for p in itertools.product(*3 * [[False, True]])] |
Static Public Attributes inherited from microscope.abc.DataDevice | |
| set_setting = keep_acquiring(Device.set_setting) | |
Definition at line 154 of file __init__.py.
| def microscope.simulators.SimulatedCamera.__init__ | ( | self, | |
| ** | buffer_length | ||
| ) |
Derived.__init__ must call this at some point.
Reimplemented from microscope.abc.Camera.
Reimplemented in microscope.testsuite.devices.TestCamera, and microscope.simulators.stage_aware_camera.StageAwareCamera.
Definition at line 157 of file __init__.py.
References microscope.simulators.SimulatedCamera.__init__(), microscope.simulators.SimulatedCamera._a_setting, microscope.abc.DataDevice._acquiring, microscope.cameras.andorsdk3.AndorSDK3._acquiring(), microscope.cameras.atmcd.AndorAtmcd._acquiring(), microscope.cameras.picam.PiCamera._acquiring, microscope.cameras.pvcam.PVCamera._acquiring, microscope.cameras.ximea.XimeaCamera._acquiring, microscope.simulators.SimulatedCamera._acquiring, microscope.cameras.atmcd.AndorAtmcd._binning, microscope.cameras.ximea.XimeaCamera._binning, microscope.simulators.SimulatedCamera._binning, microscope.simulators.SimulatedCamera._error_percent, microscope.cameras.andorsdk3.AndorSDK3._exposure_time, microscope.cameras.picam.PiCamera._exposure_time, microscope.simulators.SimulatedCamera._exposure_time, microscope.simulators.SimulatedCamera._gain, microscope.simulators.SimulatedCamera._image_generator, microscope.cameras.andorsdk3.AndorSDK3._purge_buffers(), microscope.simulators.SimulatedCamera._purge_buffers(), microscope.cameras.atmcd.AndorAtmcd._roi, microscope.cameras.ximea.XimeaCamera._roi, microscope.simulators.SimulatedCamera._roi, microscope.simulators.SimulatedCamera._sent, microscope.simulators.SimulatedCamera._set_error_percent(), microscope.simulators.SimulatedCamera._set_gain(), microscope.cameras.picam.PiCamera._triggered, microscope.simulators.SimulatedCamera._triggered, microscope.simulators.stage_aware_camera.StageAwareCamera._triggered, and microscope.abc.Device.add_setting().
Referenced by microscope.simulators.SimulatedCamera.__init__().
| def microscope.simulators.SimulatedCamera.abort | ( | self | ) |
Stop acquisition as soon as possible.
Reimplemented from microscope.abc.DataDevice.
Definition at line 253 of file __init__.py.
References microscope.abc.DataDevice._acquiring, microscope.cameras.andorsdk3.AndorSDK3._acquiring(), microscope.cameras.atmcd.AndorAtmcd._acquiring(), microscope.cameras.picam.PiCamera._acquiring, microscope.cameras.pvcam.PVCamera._acquiring, microscope.cameras.ximea.XimeaCamera._acquiring, microscope.simulators.SimulatedCamera._acquiring, microscope.simulators.SimulatedCamera._create_buffers(), microscope.cameras.andorsdk3.AndorSDK3._create_buffers(), microscope.simulators.SimulatedCamera._sent, microscope.abc.DataDevice.abort(), microscope.cameras.andorsdk3.AndorSDK3.abort(), microscope.cameras.atmcd.AndorAtmcd.abort(), microscope.cameras.picam.PiCamera.abort(), microscope.cameras.pvcam.PVCamera.abort(), microscope.cameras.ximea.XimeaCamera.abort(), and microscope.simulators.SimulatedCamera.abort().
Referenced by microscope.simulators.SimulatedCamera.abort(), microscope.cameras.andorsdk3.AndorSDK3.get_id(), microscope.cameras.atmcd.AndorAtmcd.get_id(), microscope.cameras.picam.PiCamera.initialize(), microscope.cameras.ximea.XimeaCamera.initialize(), microscope.cameras.andorsdk3.AndorSDK3.set_trigger(), and microscope.abc.Device.update_settings().
| def microscope.simulators.SimulatedCamera.get_cycle_time | ( | self | ) |
Return the cycle time in seconds.
Reimplemented from microscope.abc.Camera.
Definition at line 277 of file __init__.py.
References microscope.abc.DataDevice._acquiring, microscope.cameras.andorsdk3.AndorSDK3._acquiring(), microscope.cameras.atmcd.AndorAtmcd._acquiring(), microscope.cameras.picam.PiCamera._acquiring, microscope.cameras.pvcam.PVCamera._acquiring, microscope.cameras.ximea.XimeaCamera._acquiring, microscope.simulators.SimulatedCamera._acquiring, microscope.cameras.atmcd.AndorAtmcd._binning, microscope.cameras.ximea.XimeaCamera._binning, microscope.simulators.SimulatedCamera._binning, microscope.cameras.andorsdk3.AndorSDK3._exposure_time, microscope.cameras.picam.PiCamera._exposure_time, microscope.simulators.SimulatedCamera._exposure_time, microscope.cameras.atmcd.AndorAtmcd._roi, microscope.cameras.ximea.XimeaCamera._roi, microscope.simulators.SimulatedCamera._roi, microscope.cameras.picam.PiCamera._triggered, microscope.simulators.SimulatedCamera._triggered, microscope.simulators.stage_aware_camera.StageAwareCamera._triggered, microscope.abc.TriggerTargetMixin.trigger(), and microscope.abc.DeformableMirror.trigger().
| def microscope.simulators.SimulatedCamera.get_exposure_time | ( | self | ) |
Return the current exposure time in seconds.
Reimplemented from microscope.abc.Camera.
Definition at line 274 of file __init__.py.
References microscope.cameras.andorsdk3.AndorSDK3._exposure_time, microscope.cameras.picam.PiCamera._exposure_time, and microscope.simulators.SimulatedCamera._exposure_time.
| def microscope.simulators.SimulatedCamera.set_exposure_time | ( | self, | |
| value | |||
| ) |
Set the exposure time on the device in seconds.
Reimplemented from microscope.abc.Camera.
Definition at line 271 of file __init__.py.
References microscope.cameras.andorsdk3.AndorSDK3._exposure_time, microscope.cameras.picam.PiCamera._exposure_time, and microscope.simulators.SimulatedCamera._exposure_time.
| def microscope.simulators.SimulatedCamera.soft_trigger | ( | self | ) |
Definition at line 283 of file __init__.py.
Referenced by microscope.cameras.picam.PiCamera.get_cycle_time().