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BioCore
4.0.1
A .NET library & program for annotating, editing various microscopy imaging formats using Bioformats supported images. Including whole slide, pyramidal, and series.
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BioCore
4.0.1
A .NET library & program for annotating, editing various microscopy imaging formats using Bioformats supported images. Including whole slide, pyramidal, and series.
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This is the complete list of members for BioCore.BioImage, including all inherited members.
| Annotations (defined in BioCore.BioImage) | BioCore.BioImage | |
| AutoThreshold(BioImage b, bool updateImageStats) | BioCore.BioImage | static |
| AutoThreshold() | BioCore.BioImage | static |
| AutoThresholdThread(BioImage b) | BioCore.BioImage | static |
| Bake(int rmin, int rmax, int gmin, int gmax, int bmin, int bmax) | BioCore.BioImage | |
| Bake(IntRange rf, IntRange gf, IntRange bf) | BioCore.BioImage | |
| BChannel (defined in BioCore.BioImage) | BioCore.BioImage | |
| BioImage(string file) (defined in BioCore.BioImage) | BioCore.BioImage | |
| bitsPerPixel (defined in BioCore.BioImage) | BioCore.BioImage | |
| BRange (defined in BioCore.BioImage) | BioCore.BioImage | |
| Buffers (defined in BioCore.BioImage) | BioCore.BioImage | |
| Channels (defined in BioCore.BioImage) | BioCore.BioImage | |
| columns (defined in BioCore.BioImage) | BioCore.BioImage | static |
| Coordinate (defined in BioCore.BioImage) | BioCore.BioImage | |
| Coords (defined in BioCore.BioImage) | BioCore.BioImage | |
| Copy(BioImage b, bool rois) (defined in BioCore.BioImage) | BioCore.BioImage | static |
| Copy(BioImage b) (defined in BioCore.BioImage) | BioCore.BioImage | static |
| Copy(bool rois) (defined in BioCore.BioImage) | BioCore.BioImage | |
| Copy() (defined in BioCore.BioImage) | BioCore.BioImage | |
| CopyInfo(BioImage b, bool copyAnnotations, bool copyChannels) (defined in BioCore.BioImage) | BioCore.BioImage | static |
| Dispose() | BioCore.BioImage | |
| ExportROIFolder(string path, string filename) | BioCore.BioImage | static |
| ExportROIsCSV(string filename, List< ROI > Annotations) | BioCore.BioImage | static |
| ExtractRegionFromTiledTiff(BioImage b, int x, int y, int width, int height, int res) (defined in BioCore.BioImage) | BioCore.BioImage | static |
| file (defined in BioCore.BioImage) | BioCore.BioImage | |
| filename (defined in BioCore.BioImage) | BioCore.BioImage | |
| Filename (defined in BioCore.BioImage) | BioCore.BioImage | |
| FilesToStack(string[] files, int sizeZ, int sizeC, int sizeT) | BioCore.BioImage | static |
| filter16 (defined in BioCore.BioImage) | BioCore.BioImage | static |
| filter8 (defined in BioCore.BioImage) | BioCore.BioImage | static |
| FindFocus(BioImage im, int Channel, int Time) (defined in BioCore.BioImage) | BioCore.BioImage | static |
| FolderToStack(string path) | BioCore.BioImage | static |
| frameInterval (defined in BioCore.BioImage) | BioCore.BioImage | |
| GChannel (defined in BioCore.BioImage) | BioCore.BioImage | |
| GetAnnotations(ZCT coord) | BioCore.BioImage | |
| GetAnnotations(int Z, int C, int T) | BioCore.BioImage | |
| GetBitmap(int z, int c, int t) | BioCore.BioImage | |
| GetBitmap(ZCT coord) | BioCore.BioImage | |
| GetBitMaxValue(int bt) | BioCore.BioImage | static |
| GetBitsPerPixel(int bt) | BioCore.BioImage | static |
| GetChannelImage(int ind, RGB rGB) | BioCore.BioImage | |
| GetEmission(ZCT coord, IntRange rf, IntRange gf, IntRange bf) | BioCore.BioImage | |
| GetFiltered(ZCT coord, IntRange r, IntRange g, IntRange b) | BioCore.BioImage | |
| GetFiltered(int ind, IntRange r, IntRange g, IntRange b) | BioCore.BioImage | |
| GetImageByCoord(int z, int c, int t) | BioCore.BioImage | |
| GetIndex(int ix, int iy) | BioCore.BioImage | |
| GetIndexRGB(int ix, int iy, int index) | BioCore.BioImage | |
| GetLevelDownsample(int level) | BioCore.BioImage | |
| GetPixelFormat(int rgbChannelCount, int bitsPerPixel) | BioCore.BioImage | static |
| GetPixelFormat(int rgbChannelCount, ome.xml.model.enums.PixelType px) (defined in BioCore.BioImage) | BioCore.BioImage | static |
| GetRGBBitmap(ZCT coord, IntRange rf, IntRange gf, IntRange bf) | BioCore.BioImage | |
| GetSeriesCount(string file) (defined in BioCore.BioImage) | BioCore.BioImage | static |
| GetTile(BioImage b, ZCT coord, int serie, int tilex, int tiley, int tileSizeX, int tileSizeY, bool OpenSlide=true) | BioCore.BioImage | static |
| GetTile(BioImage b, int index, int serie, int tilex, int tiley, int tileSizeX, int tileSizeY, bool OpenSlide=true) (defined in BioCore.BioImage) | BioCore.BioImage | static |
| GetTileRGB(ZCT coord, int serie, int tilex, int tiley, int tileSizeX, int tileSizeY) (defined in BioCore.BioImage) | BioCore.BioImage | |
| GetUnitPerPixel(int level) | BioCore.BioImage | |
| GetValue(ZCTXY coord) | BioCore.BioImage | |
| GetValue(ZCT coord, int x, int y) | BioCore.BioImage | |
| GetValue(int z, int c, int t, int x, int y) | BioCore.BioImage | |
| GetValueRGB(ZCTXY coord, int index) | BioCore.BioImage | |
| GetValueRGB(ZCT coord, int x, int y, int RGBindex) | BioCore.BioImage | |
| GetValueRGB(int z, int c, int t, int x, int y, int RGBindex) | BioCore.BioImage | |
| GRange (defined in BioCore.BioImage) | BioCore.BioImage | |
| ID (defined in BioCore.BioImage) | BioCore.BioImage | |
| ImageCount (defined in BioCore.BioImage) | BioCore.BioImage | |
| imagesPerSeries (defined in BioCore.BioImage) | BioCore.BioImage | |
| ImagesToStack(string[] files) | BioCore.BioImage | static |
| ImageType enum name (defined in BioCore.BioImage) | BioCore.BioImage | |
| ImportROIsCSV(string filename) | BioCore.BioImage | static |
| imRead (defined in BioCore.BioImage) | BioCore.BioImage | |
| Initialize() | BioCore.BioImage | static |
| Initialized (defined in BioCore.BioImage) | BioCore.BioImage | static |
| isGroup (defined in BioCore.BioImage) | BioCore.BioImage | |
| isOME(string file) | BioCore.BioImage | static |
| isOMESeries(string file) | BioCore.BioImage | static |
| isPyramidal (defined in BioCore.BioImage) | BioCore.BioImage | |
| isRGB (defined in BioCore.BioImage) | BioCore.BioImage | |
| isSeries (defined in BioCore.BioImage) | BioCore.BioImage | |
| isTiffSeries(string file) | BioCore.BioImage | static |
| isTime (defined in BioCore.BioImage) | BioCore.BioImage | |
| LabelResolution (defined in BioCore.BioImage) | BioCore.BioImage | |
| Level (defined in BioCore.BioImage) | BioCore.BioImage | |
| LevelFromResolution(double Resolution) | BioCore.BioImage | |
| littleEndian (defined in BioCore.BioImage) | BioCore.BioImage | |
| Loading (defined in BioCore.BioImage) | BioCore.BioImage | |
| loadTimeMS (defined in BioCore.BioImage) | BioCore.BioImage | |
| loadTimeTicks (defined in BioCore.BioImage) | BioCore.BioImage | |
| MacroResolution (defined in BioCore.BioImage) | BioCore.BioImage | |
| MergeChannels(BioImage b2, BioImage b) | BioCore.BioImage | static |
| MergeChannels(string bname, string b2name) | BioCore.BioImage | static |
| MergeT(BioImage b) | BioCore.BioImage | static |
| MergeZ(BioImage b) | BioCore.BioImage | static |
| NewLine (defined in BioCore.BioImage) | BioCore.BioImage | static |
| Open(string file) | BioCore.BioImage | static |
| Open(string[] files) | BioCore.BioImage | static |
| OpenAsync(string file, bool OME, bool newtab, bool images, int series) | BioCore.BioImage | static |
| OpenAsync(string[] files, bool OME, bool tab, bool images) | BioCore.BioImage | static |
| OpenFile(string file) | BioCore.BioImage | static |
| OpenFile(string file, int series, bool newTab) | BioCore.BioImage | static |
| OpenFile(string file, int series, bool newTab, bool addToImages, bool tile, int x, int y, int w, int h) | BioCore.BioImage | static |
| OpenFile(string file, int series, bool tab, bool addToImages) | BioCore.BioImage | static |
| OpenOME(string file) | BioCore.BioImage | static |
| OpenOME(string file, int serie, bool newTab, bool addToImages) | BioCore.BioImage | static |
| OpenOME(string file, int serie, bool tab, bool addToImages, bool tile, int tilex, int tiley, int tileSizeX, int tileSizeY, bool useOpenSlide=true) (defined in BioCore.BioImage) | BioCore.BioImage | static |
| OpenOMEROIs(string file, int series) | BioCore.BioImage | static |
| OpenOMESeries(string file, bool newTab, bool addToImages) | BioCore.BioImage | static |
| OpenSeries(string file) | BioCore.BioImage | static |
| openSlideBase (defined in BioCore.BioImage) | BioCore.BioImage | |
| openSlideImage (defined in BioCore.BioImage) | BioCore.BioImage | |
| OpenVip(BioImage b, int pagenumber, int x, int y, int w, int h) (defined in BioCore.BioImage) | BioCore.BioImage | static |
| OpenVips(BioImage b, int pagecount) (defined in BioCore.BioImage) | BioCore.BioImage | static |
| OpenXML(string file) | BioCore.BioImage | static |
| operator*(BioImage a, float b) | BioCore.BioImage | static |
| operator*(BioImage a, ColorS b) | BioCore.BioImage | static |
| operator+(BioImage a, float b) | BioCore.BioImage | static |
| operator+(BioImage a, ColorS b) | BioCore.BioImage | static |
| operator-(BioImage a, float b) | BioCore.BioImage | static |
| operator-(BioImage a, ColorS b) | BioCore.BioImage | static |
| operator/(BioImage a, float b) | BioCore.BioImage | static |
| operator/(BioImage a, ColorS b) | BioCore.BioImage | static |
| PhysicalSizeX (defined in BioCore.BioImage) | BioCore.BioImage | |
| PhysicalSizeY (defined in BioCore.BioImage) | BioCore.BioImage | |
| PhysicalSizeZ (defined in BioCore.BioImage) | BioCore.BioImage | |
| Planes (defined in BioCore.BioImage) | BioCore.BioImage | static |
| Plate (defined in BioCore.BioImage) | BioCore.BioImage | |
| PyramidalOrigin (defined in BioCore.BioImage) | BioCore.BioImage | |
| PyramidalSize (defined in BioCore.BioImage) | BioCore.BioImage | |
| RChannel (defined in BioCore.BioImage) | BioCore.BioImage | |
| Resolution (defined in BioCore.BioImage) | BioCore.BioImage | |
| Resolutions (defined in BioCore.BioImage) | BioCore.BioImage | |
| RGBChannelCount (defined in BioCore.BioImage) | BioCore.BioImage | |
| rgbChannels (defined in BioCore.BioImage) | BioCore.BioImage | |
| ROIsToString(List< ROI > Annotations) | BioCore.BioImage | static |
| ROIToString(ROI an) | BioCore.BioImage | static |
| RotateFlip(RotateFlipType rot) | BioCore.BioImage | |
| RRange (defined in BioCore.BioImage) | BioCore.BioImage | |
| Save(string file, string ID) | BioCore.BioImage | static |
| SaveAsync(string file, string id, int serie, bool ome) | BioCore.BioImage | static |
| SaveFile(string file, string ID) | BioCore.BioImage | static |
| SaveOME(string file, string ID) | BioCore.BioImage | static |
| SaveOMEPyramidal(BioImage[] bms, string file, Enums.ForeignTiffCompression compression, int compressionLevel) | BioCore.BioImage | static |
| SaveOMESeries(string[] files, string f, bool planes) | BioCore.BioImage | static |
| SaveOMESeries(BioImage[] bms, string f, bool planes) (defined in BioCore.BioImage) | BioCore.BioImage | static |
| SaveOMEStiched(BioImage[] bms, string file, string compression) (defined in BioCore.BioImage) | BioCore.BioImage | static |
| SavePyramidalAsync(BioImage[] imgs, string file, Enums.ForeignTiffCompression com, int compLevel) | BioCore.BioImage | static |
| SaveSeries(string[] files, string ID) | BioCore.BioImage | static |
| SaveSeriesAsync(BioImage[] imgs, string file, bool ome) | BioCore.BioImage | static |
| script (defined in BioCore.BioImage) | BioCore.BioImage | |
| selected (defined in BioCore.BioImage) | BioCore.BioImage | |
| SelectedBuffer (defined in BioCore.BioImage) | BioCore.BioImage | |
| series (defined in BioCore.BioImage) | BioCore.BioImage | |
| seriesCount (defined in BioCore.BioImage) | BioCore.BioImage | |
| SetValue(ZCTXY coord, ushort value) | BioCore.BioImage | |
| SetValue(int x, int y, int ind, ushort value) | BioCore.BioImage | |
| SetValue(int x, int y, ZCT coord, ushort value) | BioCore.BioImage | |
| SetValueRGB(ZCTXY coord, int RGBindex, ushort value) | BioCore.BioImage | |
| SizeC (defined in BioCore.BioImage) | BioCore.BioImage | |
| SizeT (defined in BioCore.BioImage) | BioCore.BioImage | |
| SizeX (defined in BioCore.BioImage) | BioCore.BioImage | |
| SizeY (defined in BioCore.BioImage) | BioCore.BioImage | |
| SizeZ (defined in BioCore.BioImage) | BioCore.BioImage | |
| slideBase (defined in BioCore.BioImage) | BioCore.BioImage | |
| slideImage (defined in BioCore.BioImage) | BioCore.BioImage | |
| SplitChannels() | BioCore.BioImage | |
| SplitChannels(BioImage bb) | BioCore.BioImage | static |
| SplitChannels(string name) | BioCore.BioImage | static |
| StackThreshold(bool bit16) | BioCore.BioImage | |
| StageSizeX (defined in BioCore.BioImage) | BioCore.BioImage | |
| StageSizeY (defined in BioCore.BioImage) | BioCore.BioImage | |
| StageSizeZ (defined in BioCore.BioImage) | BioCore.BioImage | |
| Statistics (defined in BioCore.BioImage) | BioCore.BioImage | |
| StringToROI(string sts) | BioCore.BioImage | static |
| Substack(BioImage orig, int ser, int zs, int ze, int cs, int ce, int ts, int te) | BioCore.BioImage | static |
| swatch (defined in BioCore.BioImage) | BioCore.BioImage | static |
| TileX (defined in BioCore.BioImage) | BioCore.BioImage | |
| TileY (defined in BioCore.BioImage) | BioCore.BioImage | |
| To16Bit() | BioCore.BioImage | |
| To24Bit() | BioCore.BioImage | |
| To32Bit() | BioCore.BioImage | |
| To48Bit() | BioCore.BioImage | |
| To8Bit() | BioCore.BioImage | |
| ToImageSizeX(double d) | BioCore.BioImage | |
| ToImageSizeY(double d) | BioCore.BioImage | |
| ToImageSpace(PointD p) | BioCore.BioImage | |
| ToImageSpace(List< PointD > p) | BioCore.BioImage | |
| ToImageSpace(PointF[] p) | BioCore.BioImage | |
| ToImageSpace(RectangleD p) | BioCore.BioImage | |
| ToImageSpaceX(double x) | BioCore.BioImage | |
| ToImageSpaceY(double y) | BioCore.BioImage | |
| ToStageSpace(PointD p) | BioCore.BioImage | |
| ToStageSpace(PointD p, double physicalSizeX, double physicalSizeY, double volumeX, double volumeY) | BioCore.BioImage | static |
| ToStageSpace(RectangleD p) | BioCore.BioImage | |
| ToStageSpace(RectangleD p, double physicalSizeX, double physicalSizeY, double volumeX, double volumeY) | BioCore.BioImage | static |
| ToStageSpace(PointD[] p) | BioCore.BioImage | |
| ToStageSpace(PointD[] p, double physicalSizeX, double physicalSizeY, double volumeX, double volumeY) | BioCore.BioImage | static |
| ToStageSpace(PointD p, int resolution) | BioCore.BioImage | |
| ToString() | BioCore.BioImage | |
| Type (defined in BioCore.BioImage) | BioCore.BioImage | |
| Update(BioImage b) | BioCore.BioImage | static |
| Update() | BioCore.BioImage | |
| UpdateBuffersPyramidal() | BioCore.BioImage | |
| UpdateCoords() (defined in BioCore.BioImage) | BioCore.BioImage | |
| UpdateCoords(int sz, int sc, int st) | BioCore.BioImage | |
| UpdateCoords(int sz, int sc, int st, string order) | BioCore.BioImage | |
| vipPages (defined in BioCore.BioImage) | BioCore.BioImage | |
| VipsSupport(string file) (defined in BioCore.BioImage) | BioCore.BioImage | static |
| Volume (defined in BioCore.BioImage) | BioCore.BioImage | |
| watch (defined in BioCore.BioImage) | BioCore.BioImage |
1.9.5